import clean BK tree at cset 1.3670

16 files changed, 265 insertions, 0 deletions

diff --git a/packages/nonworking/r/r-2.0.0/.mtn2git_empty b/packages/nonworking/r/r-2.0.0/.mtn2git_empty
new file mode 100644
index 0000000000..e69de29bb2
--- /dev/null
+++ b/packages/nonworking/r/r-2.0.0/.mtn2git_empty
diff --git a/packages/nonworking/r/r-2.0.0/configure.patch b/packages/nonworking/r/r-2.0.0/configure.patch
index e69de29bb2..acd7e6c467 100644
--- a/packages/nonworking/r/r-2.0.0/configure.patch
+++ b/packages/nonworking/r/r-2.0.0/configure.patch
@@ -0,0 +1,99 @@
+--- R-2.0.0/configure~	2004-12-11 00:34:27.270027696 +0000
++++ R-2.0.0/configure	2004-12-10 23:06:11.000000000 +0000
+@@ -20960,41 +20960,41 @@
+ 
+ ### * Checks for libraries.
+ 
+-## Set up LD_LIBRARY_PATH or equivalent.
+-## <FIXME>
+-## What is this doing *HERE*?
+-## Should be needed for tests using AC_RUN_IFELSE()?
+-## Make sure that non-standard directories specified via '-L' are really
+-## searched in the tests.
+-## Note: earlier versions used LIBS rather than LDFLAGS.
+-for arg in ${LDFLAGS}; do
+-  case "${arg}" in
+-    -L*)
+-      lib=`echo ${arg} | sed "s/^-L//"`
+-      separator="${PATH_SEPARATOR}"
+-test -z "${separator}" && separator=" "
+-if test -z "${R_LD_LIBRARY_PATH}"; then
+-  R_LD_LIBRARY_PATH="${lib}"
+-else
+-  R_LD_LIBRARY_PATH="${R_LD_LIBRARY_PATH}${separator}${lib}"
+-fi
+-      ;;
+-  esac
+-done
+-## </FIXME>
+-
+-## Record name of environment variable which tells the dynamic linker
+-## where to find shlibs (typically, 'LD_LIBRARY_PATH').
+-ltout=`./libtool --config | grep '^shlibpath_var='`
+-eval "${ltout}"
+-
+-## Export LD_LIBRARY_PATH or equivalent.
+-if eval "test -z \"\${${shlibpath_var}}\""; then
+-  eval "${shlibpath_var}=\"${R_LD_LIBRARY_PATH}\""
+-else
+-  eval "${shlibpath_var}=\"${R_LD_LIBRARY_PATH}${PATH_SEPARATOR}\${${shlibpath_var}}\""
+-fi
+-eval "export ${shlibpath_var}"
++### Set up LD_LIBRARY_PATH or equivalent.
++### <FIXME>
++### What is this doing *HERE*?
++### Should be needed for tests using AC_RUN_IFELSE()?
++### Make sure that non-standard directories specified via '-L' are really
++### searched in the tests.
++### Note: earlier versions used LIBS rather than LDFLAGS.
++#for arg in ${LDFLAGS}; do
++#  case "${arg}" in
++#    -L*)
++#      lib=`echo ${arg} | sed "s/^-L//"`
++#      separator="${PATH_SEPARATOR}"
++#test -z "${separator}" && separator=" "
++#if test -z "${R_LD_LIBRARY_PATH}"; then
++#  R_LD_LIBRARY_PATH="${lib}"
++#else
++#  R_LD_LIBRARY_PATH="${R_LD_LIBRARY_PATH}${separator}${lib}"
++#fi
++#      ;;
++#  esac
++#done
++### </FIXME>
++
++### Record name of environment variable which tells the dynamic linker
++### where to find shlibs (typically, 'LD_LIBRARY_PATH').
++#ltout=`./libtool --config | grep '^shlibpath_var='`
++#eval "${ltout}"
++#
++### Export LD_LIBRARY_PATH or equivalent.
++#if eval "test -z \"\${${shlibpath_var}}\""; then
++#  eval "${shlibpath_var}=\"${R_LD_LIBRARY_PATH}\""
++#else
++#  eval "${shlibpath_var}=\"${R_LD_LIBRARY_PATH}${PATH_SEPARATOR}\${${shlibpath_var}}\""
++#fi
++#eval "export ${shlibpath_var}"
+ 
+ ## Yes, we already need this at configure time ...
+ case "${host_os}" in
+@@ -26334,6 +26334,9 @@
+ 
+ fi
+ 
++#<Cross-compile addition>
++r_cv_prog_f77_can_run=yes
++#</Cross-compile Addition>
+ 
+ echo "$as_me:$LINENO: checking whether mixed C/Fortran code can be run" >&5
+ echo $ECHO_N "checking whether mixed C/Fortran code can be run... $ECHO_C" >&6
+@@ -26393,6 +26396,9 @@
+    { (exit 1); exit 1; }; }
+ fi
+ 
++#<Cross-compile addition>
++r_cv_prog_f77_cc_compat=yes
++#</Cross-compile Addition>
+ 
+ echo "$as_me:$LINENO: checking whether ${F77} and ${CC} agree on int and double" >&5
+ echo $ECHO_N "checking whether ${F77} and ${CC} agree on int and double... $ECHO_C" >&6
diff --git a/packages/nonworking/r/r-2.0.0/src_library_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_Makefile.patch
index e69de29bb2..fcf4cd4390 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_Makefile.patch
@@ -0,0 +1,16 @@
+--- R-2.0.0/src/library/Makefile.in~	2004-12-12 11:01:07.840925056 +0000
++++ R-2.0.0/src/library/Makefile.in	2004-12-12 11:02:49.683442640 +0000
+@@ -20,11 +20,11 @@
+ ## Need to go through Rcmd rather than just call $(PERL) to ensure that
+ ## PERL5LIB/PERLLIB are set appropriately (or do this ourselves).
+ ## See e.g. @file{src/gnuwin32/help/Makefile}.
+-R_CMD_BUILD_HELP = $(top_builddir)/bin/R CMD perl $(top_srcdir)/share/perl/build-help.pl
++R_CMD_BUILD_HELP = $(R_EXE_NATIVE) CMD perl $(top_srcdir)/share/perl/build-help.pl
+ ## </NOTE>
+ R_CMD_BUILD_HELP_OPTS =
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ PDFLATEX = @PDFLATEX@
+ 
diff --git a/packages/nonworking/r/r-2.0.0/src_library_Recommended_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_Recommended_Makefile.patch
index e69de29bb2..6374c6366d 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_Recommended_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_Recommended_Makefile.patch
@@ -0,0 +1,18 @@
+--- R-2.0.0/src/library/Recommended/Makefile.in~	2004-12-12 11:26:10.565476200 +0000
++++ R-2.0.0/src/library/Recommended/Makefile.in	2004-12-12 11:27:09.177565808 +0000
+@@ -12,7 +12,7 @@
+ 
+ distdir = $(top_builddir)/$(PACKAGE)-$(VERSION)/$(subdir)
+ DISTFILES = Makefile.in .cvsignore
+-R = R_LIBS= $(top_builddir)/bin/R
++R = R_LIBS= $(R_EXE_NATIVE)
+ 
+ ## foo.ts is the timestamp for package foo;
+ ## foo.tgz is a symlink to foo_x.y-z.tar.gz in the source dir.
+@@ -79,4 +79,4 @@
+ 
+ ## Hardcoded dependencies (see 'share/make/vars.mk')
+ mgcv.ts: nlme.ts VR.ts
+-nlme.ts: lattice.ts
+\ No newline at end of file
++nlme.ts: lattice.ts
diff --git a/packages/nonworking/r/r-2.0.0/src_library_base_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_base_Makefile.patch
index e69de29bb2..210fb80214 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_base_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_base_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/base/Makefile.in~	2004-12-12 11:04:28.183468360 +0000
++++ R-2.0.0/src/library/base/Makefile.in	2004-12-12 11:05:07.761451592 +0000
+@@ -19,7 +19,7 @@
+ 
+ RdSRC = $(srcdir)/man/*.Rd $(srcdir)/man/$(R_OSTYPE)/*.Rd
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ all: Makefile DESCRIPTION
+ 	@echo "building package '$(pkg)'"
diff --git a/packages/nonworking/r/r-2.0.0/src_library_datasets_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_datasets_Makefile.patch
index e69de29bb2..3b34453239 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_datasets_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_datasets_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/datasets/Makefile.in~	2004-12-12 11:05:42.632150440 +0000
++++ R-2.0.0/src/library/datasets/Makefile.in	2004-12-12 11:06:22.398105096 +0000
+@@ -17,7 +17,7 @@
+ 
+ RSRC = $(srcdir)/R/zzz.R
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla --slave
++R_EXE = $(R_EXE_NATIVE) --vanilla --slave
+ 
+ all: Makefile DESCRIPTION
+ 	@echo "building package '$(pkg)'"
diff --git a/packages/nonworking/r/r-2.0.0/src_library_grDevices_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_grDevices_Makefile.patch
index e69de29bb2..84740288eb 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_grDevices_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_grDevices_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/grDevices/Makefile.in~	2004-12-12 11:07:59.989268984 +0000
++++ R-2.0.0/src/library/grDevices/Makefile.in	2004-12-12 11:09:05.891250360 +0000
+@@ -15,7 +15,7 @@
+ 
+ pkg = grDevices
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ RSRC = `LC_COLLATE=C ls $(srcdir)/R/*.R $(srcdir)/R/$(R_OSTYPE)/*.R`
+ RdSRC = $(srcdir)/man/*.Rd $(srcdir)/man/$(R_OSTYPE)/*.Rd
diff --git a/packages/nonworking/r/r-2.0.0/src_library_graphics_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_graphics_Makefile.patch
index e69de29bb2..1a07433485 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_graphics_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_graphics_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/graphics/Makefile.in~	2004-12-12 11:06:47.451296432 +0000
++++ R-2.0.0/src/library/graphics/Makefile.in	2004-12-12 11:07:21.302150320 +0000
+@@ -15,7 +15,7 @@
+ 
+ pkg = graphics
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ RSRC = `LC_COLLATE=C ls $(srcdir)/R/*.R`
+ RdSRC = $(srcdir)/man/*.Rd
diff --git a/packages/nonworking/r/r-2.0.0/src_library_grid_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_grid_Makefile.patch
index e69de29bb2..7b819150e4 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_grid_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_grid_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/grid/Makefile.in~	2004-12-12 11:09:32.926140432 +0000
++++ R-2.0.0/src/library/grid/Makefile.in	2004-12-12 11:10:07.531879560 +0000
+@@ -15,7 +15,7 @@
+ 
+ pkg = grid
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ all: Makefile DESCRIPTION
+ 	@echo "building package '$(pkg)'"
diff --git a/packages/nonworking/r/r-2.0.0/src_library_methods_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_methods_Makefile.patch
index e69de29bb2..2a682c8662 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_methods_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_methods_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/methods/Makefile.in~	2004-12-12 11:10:31.099296768 +0000
++++ R-2.0.0/src/library/methods/Makefile.in	2004-12-12 11:11:04.778176800 +0000
+@@ -14,7 +14,7 @@
+ 
+ pkg = methods
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ all: Makefile DESCRIPTION
+ 	@echo "building package '$(pkg)'"
diff --git a/packages/nonworking/r/r-2.0.0/src_library_splines_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_splines_Makefile.patch
index e69de29bb2..4d235de3b1 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_splines_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_splines_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/splines/Makefile.in~	2004-12-12 11:12:00.728671032 +0000
++++ R-2.0.0/src/library/splines/Makefile.in	2004-12-12 11:12:20.417677848 +0000
+@@ -15,7 +15,7 @@
+ 
+ pkg = splines
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ all: Makefile DESCRIPTION
+ 	@echo "building package '$(pkg)'"
diff --git a/packages/nonworking/r/r-2.0.0/src_library_stats4_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_stats4_Makefile.patch
index e69de29bb2..b549824187 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_stats4_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_stats4_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/stats4/Makefile.in~	2004-12-12 11:13:27.693450376 +0000
++++ R-2.0.0/src/library/stats4/Makefile.in	2004-12-12 11:13:40.442512224 +0000
+@@ -15,7 +15,7 @@
+ 
+ pkg = stats4
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ all: Makefile DESCRIPTION
+ 	@echo "building package '$(pkg)'"
diff --git a/packages/nonworking/r/r-2.0.0/src_library_stats_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_stats_Makefile.patch
index e69de29bb2..b94cf237f7 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_stats_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_stats_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/stats/Makefile.in~	2004-12-12 11:12:45.191911592 +0000
++++ R-2.0.0/src/library/stats/Makefile.in	2004-12-12 11:12:58.530883760 +0000
+@@ -16,7 +16,7 @@
+ 
+ pkg = stats
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ all: Makefile DESCRIPTION
+ 	@echo "building package '$(pkg)'"
diff --git a/packages/nonworking/r/r-2.0.0/src_library_tcltk_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_tcltk_Makefile.patch
index e69de29bb2..77b6a3ae81 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_tcltk_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_tcltk_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/tcltk/Makefile.in~	2004-12-12 11:13:59.269650064 +0000
++++ R-2.0.0/src/library/tcltk/Makefile.in	2004-12-12 11:14:21.897210152 +0000
+@@ -15,7 +15,7 @@
+ 
+ pkg = tcltk
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ RSRC = `LC_COLLATE=C ls $(srcdir)/R/*.R $(srcdir)/R/$(R_OSTYPE)/*.R`
+ 
diff --git a/packages/nonworking/r/r-2.0.0/src_library_tools_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_tools_Makefile.patch
index e69de29bb2..84924652e2 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_tools_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_tools_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/tools/Makefile.in~	2004-12-12 11:14:42.021150848 +0000
++++ R-2.0.0/src/library/tools/Makefile.in	2004-12-12 11:14:57.141852152 +0000
+@@ -15,7 +15,7 @@
+ 
+ pkg = tools
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ all: Makefile DESCRIPTION
+ 	@echo "building package '$(pkg)'"
diff --git a/packages/nonworking/r/r-2.0.0/src_library_utils_Makefile.patch b/packages/nonworking/r/r-2.0.0/src_library_utils_Makefile.patch
index e69de29bb2..e03913935d 100644
--- a/packages/nonworking/r/r-2.0.0/src_library_utils_Makefile.patch
+++ b/packages/nonworking/r/r-2.0.0/src_library_utils_Makefile.patch
@@ -0,0 +1,11 @@
+--- R-2.0.0/src/library/utils/Makefile.in~	2004-12-12 11:15:17.339781600 +0000
++++ R-2.0.0/src/library/utils/Makefile.in	2004-12-12 11:15:31.214672296 +0000
+@@ -16,7 +16,7 @@
+ 
+ pkg = utils
+ 
+-R_EXE = $(top_builddir)/bin/R --vanilla
++R_EXE = $(R_EXE_NATIVE) --vanilla
+ 
+ RSRC0 = `LC_COLLATE=C ls $(srcdir)/R/*.R $(srcdir)/R/$(R_OSTYPE)/*.R`
+ RSRC = $(RSRC0) @BUILD_AQUA_TRUE@ `LC_COLLATE=C ls $(srcdir)/R/aqua/*.R`