Index: quilt-0.46/Makefile.in
===================================================================
--- quilt-0.46.orig/Makefile.in
+++ quilt-0.46/Makefile.in
@@ -12,7 +12,7 @@ datadir :=	@datadir@
 docdir :=	@docdir@
 mandir :=	@mandir@
 localedir :=	$(datadir)/locale
-etcdir :=	$(subst /usr/etc,/etc,$(prefix)/etc)
+etcdir :=	@sysconfdir@
 
 INSTALL :=	@INSTALL@
 POD2MAN :=	@POD2MAN@